Jan 2018     Issue 6
Research
Automated Medical Image Analysis Using Deep Convolutional Neural Networks

Prof. HENG Pheng Ann, Department of Computer Science and Engineering, CUHK

With the large number of new cancer cases registered and the public's raised awareness of health, it is not surprising to find a rapidly growing demand for improved services in the medical sector. Medical image analysis has been playing a crucial role in the modern healthcare industry. The artificial intelligence platforms (AI) we developed are able to provide a reliable, scalable as well as cost-effective alternative to significantly reduce the tedious workload of the doctors and greatly improve the diagnostic accuracy [1].


By employing deep learning technology, the research team led by Prof. HENG Pheng Ann developed start-of-the-art AI platforms for computer-aided cancer diagnosis and monitoring in the medical community. The technology has been validated on two of Hong Kong's most prevalent cancers – lung cancer and breast cancer, achieving diagnostic accuracies of 91 and 99 percent respectively in durations of between 30 seconds and ten minutes. The platforms have been reported by more than ten news medias, including China Daily Asia and Sina, and attracted great attention. Our paper presenting deep learning techniques for segmentation tasks entitled "3D deeply supervised network for automated segmentation of volumetric medical images", won the Best Paper Award of the Journal of Medical Image Analysis (MedIA) in the 20th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI).

Detection of pulmonary nodules through Deep Learning
Lung cancer has been the leading cause of cancer death worldwide [2]. At an early stage, lung cancer mostly exists in the form of small pulmonary nodules, which appear on medical images as shades of small lumps. Going through each CT slice by the naked eye will take 5 minutes to complete, which is time-consuming, and must rely on experience and focus.

We developed a two-stage framework to detect the lung nodules from CT images [3]. Firstly, we designed a 3D neural network that incorporates the particular structural characteristics of thoracic CT images and is able to predict suspicious nodule locations by finding high-probability regions in the 3D score-map. Secondly, we conduct false positive reduction that aims to remove those candidates that are not true nodules. This task is the most difficult and challenging component in the detection system, as many of the false positives take quite a similar appearance to the real nodules. Our AI platform can locate the pulmonary nodules from CT images within 30 seconds, with a sensitivity of over 91%.

Automated Detection of Metastatic Breast Cancer in Histology Images
Since 1990, the number of breast cancer patients in Hong Kong has been consistently on the rise. It is the most prevalent cancer amongst local women, and the third amongst all cancers [4].  A biopsy is the only sure way to diagnose breast cancer. However, a digital histology is of high resolution, often up to one gigabyte in file size - equivalent to a 90-minute high resolution movie. Examining such an image requires a lot of time and energy. 

To solve the problem, our team has developed a novel deep cascaded convolutional neural network to process the histopathological images. Making use of a fully convolutional network, the model can efficiently and accurately detect metastatic cancer with a high-resolution score-map. The whole automated analysis process takes about 5~10 minutes, as compared to the 15~30 minutes examined by the naked eye. In terms of accuracy, the system has achieved a rate of about 99 percent, which is 2 percent higher than analysis conducted by experienced pathologists. This indicates that it is an invaluable reference for clinical diagnosis of breast cancer.

The projects take full advantage of our research experience in the past few years, a series of research results and new technologies/methods obtained, including medical image processing and deep learning techniques. In addition, frequent collaborations among the AI researchers, IT experts, and the medical professionals involved in this project, has greatly helped to develop the platforms and improve both the efficiency and accuracy in diagnosing the diseases as well as the treatment provided to patients in the healthcare system.

In general, our project provides a well-established AI platform for computer-aided cancer diagnosis and monitoring in the medical community of Hong Kong, with global potential. Public Hospitals and Imaging Centres can adopt the platform to support the limited number of doctors and help them stabilise their performance by reducing significantly the misdiagnosis rate, which is due to limited examination time. Currently, we have established collaborations with top hospitals in HK and Mainland China. Our developed products have been set up in many hospitals including West China Hospital and United Family Healthcare.

References
[1] SHEN, D., WU, G., & SUK, H. I. : Deep learning in medical image analysis. Annual Review of Biomedical Engineering, 2017.


[2] ABERLE, D., ADAMS, A., BERG, C., BLACK, W., CLAPP, J., FAGERSTROM, R., GAREEN, I., GATSONIS, C., MARCUS, P., SICKS, J.: Reduced lung-cancer mortality with low-dose computed tomographic screening. New Engl Jour of Med (365), 395-409 (2011).


[3] DOU, Q., CHEN, H., JIN, Y., LIN, H., QIN, J., & HENG, P. A. : Automated Pulmonary Nodule Detection via 3D ConvNets with Online Sample Filtering and Hybrid-Loss Residual Learning. In International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 630-638, Springer, Cham, 2017.


[4] Jaffer, S., & BLEIWEISS, I. J. Evolution of sentinel lymph node biopsy in breast cancer, in and out of vogue? Advances in anatomic pathology, 21(6), 433-442 (2014).

  
		Fig. 1 Deep learning based system can accurately detect the primary lung cancer in CT images.
Fig. 1 Deep learning based system can accurately detect the primary lung cancer in CT images.
  
		Fig. 2 Deep learning framework to locate cancerous areas in whole-slide histology images.
Fig. 2 Deep learning framework to locate cancerous areas in whole-slide histology images.
  
		Fig. 3 Prof. HENG Pheng Ann and his team won the Best Paper Award of Medical Image Analysis in the 20th International Conference on Medical Image Computing and Computer Assisted Intervention 2017 (MedIA-MICCAI'17)
Fig. 3 Prof. HENG Pheng Ann and his team won the Best Paper Award of Medical Image Analysis in the 20th International Conference on Medical Image Computing and Computer Assisted Intervention 2017 (MedIA-MICCAI'17)
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